حسام منتظری

1. Element-specific estimation of background mutation rates in whole cancer genomes through transfer learning

Bahari Farideh، Ahangari Kohan Reza، Montazeri Hesam (2025)., npj precision oncology, 9(1).

1. A Novel Mechanistic Simulation Model for Single-Cell DNA Sequencing

Bahonar Sajedeh، Tomas Laura، Miguel Alves Joao، Posada David، Montazeri Hesam (2024)., 3rd international 12th Iranian conference on bioinformatics​, 28-29 February, Tehran, Iran.

2. Enhancing Precision for Background Mutation Rate Estimation in Cancer Genomes

Bahari Farideh، Ahangari Kohan Reza، Montazeri Hesam (2024)., 3rd international 12th Iranian conference on bioinformatics​, 28-29 February, Tehran, Iran.

3. Enhancing Model Evaluation in Single-Cell Perturbation Response Prediction

karimpour mina، Montazeri Hesam (2024)., 3rd international 12th Iranian conference on bioinformatics​, 28-29 February, Tehran, Iran.

4. Uncovering hidden cancer self-dependencies through analysis of shRNA-level dependency scores

Toghrayee Semiromi Zohreh، Montazeri Hesam (2024)., Scientific Reports, 14(1).

5. Pathway-driven analysis of synthetic lethal interactions in cancer using perturbation screens

karimpour mina، توتونچی مهدی، بهمنش مهرداد، Montazeri Hesam (2023)., Life science alliance, 7(1), e202302268.

6. SL-scan identifies synthetic lethal interactions in cancer using metabolic networks

[] []، Marashi Sayed Amir، Montazeri Hesam (2023)., Scientific Reports, 13(1).

1. A Novel Approach for Identifying Cancer Drivers in Coding and Non-coding Genomic Elements

Bahari Farideh، Ahangari Kohan Reza، Montazeri Hesam (2023)., 2nd International & 11th Iranian Conference on Bioinformatics, 28 February-1 March, Tehran, Iran.

2. Discovery of synthetic lethal interactions from large-scale pan-cancer perturbation screens

Srivatsa Sumana، Montazeri Hesam، Bianco Gaia، Coto-Llerena Mairene، Marinucci Mattia، K Y Ng Charlotte، Piscuoglio Salvatore، Beerenwinkel Niko (2022)., Nature Communications, 13(1).

3. Functional map of SARS-CoV-2 3CL protease reveals tolerant and immutable sites

Iketani Sho، Jung Hong Seo، Sheng Jenny، Bahari Farideh، Culbertson Bruce، Fallah Fereshteh، K. Aditham Arjun، F. Kratz Alexander، Luck Maria I.، Tian Ruxiao، P. Goff Stephen، Montazeri Hesam، Chavez Alejandro (2022)., Cell Host and Microbe, 1(1).

5. Variant Calling Methods and Protocols

Montazeri Hesam، Bahonar Sajedeh (2022).

6. GATA3 and MDM2 are synthetic lethal in estrogen receptor-positive breast cancers

Bianco Gaia، Coto-Llerena Mairene، Gallon John، Kancherla venkatesh، Taha-Mehlitz Stephanie، Marinucci Mattia، Konantz Martina، Srivatsa Sumana، Montazeri Hesam، Panebianco Federica، Tirunagaru Vijaya G.، De Menna Marta، Paradiso Viola، Ercan Caner، Dahmani Ahmed، Montaudon Elodie، Beerenwinkel Niko، Kruithof-de Julio Marianna، M Terracciano Luigi، Lengerke Claudia، Jeselsohn Rinath M.، Doebele Robert C.، Bidard Francois-Clement، Marangoni Elisabetta، K Y Ng Charlotte، Piscuoglio Salvatore (2022)., communications biology, 5(1).

1. Comparing mutational pathways to lopinavir resistance in HIV-1 subtypes B versus C

Posada-Cespedes, Susana، VanZyl Gert، Montazeri Hesam، Kuipers Jack، Rhee Soo-Yon، Kouyos Roger، Gunthard Huldrych F.، Beerenwinkel Niko (2021)., PLoS Computational Biology, 17(9), e1008363.

2. Systematic identification of novel cancer genes through analysis of deep shRNA perturbation screens

Montazeri Hesam، Coto-Llerena Mairene، Bianco Gaia، Zangene Ehsan، Taha-Mehlitz Stephanie، Paradiso Viola، Srivatsa Sumana، de Weck Antoine، Roma Guglielmo، Lanzafame Manuela، Bolli Martin، Beerenwinkel Niko، von Flue Markus، M Terracciano Luigi، Piscuoglio Salvatore، K Y Ng Charlotte (2021)., NUCLEIC ACIDS RESEARCH, 0(0).

1. On BCG Vaccine Protection from COVID-19: A Review

bagheri narges، Montazeri Hesam (2021)., SN Comprehensive Clinical Medicine, 3(6), 1261-1271.

2. De novo antimicrobial peptide design using a hybrid model of transformer neural networks and docking/MD

Kateb Saber M..، Montazeri Hesam، Saboury Ali Akbar (2021)., 6th IASBS Symposium in Biological Sciences and 16th Conference of Iran Society of Biophysical Chemistry (ISOBC), 4-5 February.

3. Bayesian reconstruction of transmission trees from genetic sequences and uncertain infection times

Montazeri Hesam، Little Susan، Mozaffarilegha Mozhgan، Beerenwinkel Niko، DeGruttola Victor (2020)., Statistical Applications in Genetics and Molecular Biology, 19(4).

1. PipeIT: A Singularity Container for Molecular Diagnostic Somatic Variant Calling on the Ion Torrent Next-Generation Sequencing Platform

Garofoli Andrea، Paradiso Viola، Montazeri Hesam، M. Jermann Philip، Roma Guglielmo، Tornillo Luigi، M Terracciano Luigi، Piscuoglio Salvatore، KY Ng Charlotte (2019)., JOURNAL OF MOLECULAR DIAGNOSTICS, 21(5), 884-894.

2. Hepatocellular Carcinoma Xenografts Established From Needle Biopsies Preserve the Characteristics of the Originating Tumors

Montazeri Hesam (2019)., Hepatology Communications, 3(7).

1. Network-based integration of multi-omics data for prioritizing cancer genes

Dimitrakopoulos Christos، Kumar Hindupur Sravanth، Hafliger Luca، Behr Jonas، Montazeri Hesam، N Hall Michael، Beerenwinkel Niko (2018)., BIOINFORMATICS, 34(14), 2441-2448.

1. Large-scale inference of conjunctive Bayesian networks

Montazeri Hesam، Kuipers Jack، Kouyos Roger، Boni Jurg، Yerly Sabine، Klimkait Thomas، Aubert Vincent، Gunthard Huldrych F.، Beerenwinkel Niko، Swiss HIV Cohort Study The (2016)., BIOINFORMATICS, 32(17), i727-i735.

1. Estimating the dynamics and dependencies of accumulating mutations with applications to HIV drug resistance

Montazeri Hesam، Gunthard Huldrych F.، Yang Wan-Lin، Kouyos Roger، Beerenwinkel Niko، Swiss HIV Cohort Study The (2015)., BIOSTATISTICS, 16(4), 713-726.

1. Estimating HIV-1 Fitness Characteristics from Cross-Sectional Genotype Data

Gopalakrishnan Sathej، Montazeri Hesam، Menz Stephan، Beerenwinkel Niko، Huisinga Wilhelm (2014)., PLoS Computational Biology, 10(11), e1003886.