Ali Mohammad Banaei Moghaddam

1. Centromere sequence-independent but biased loading of subgenome-specific CENH3 variants in allopolyploid Arabidopsis suecica

Karimi- Ashtiyani Raheleh, Banaei Moghaddam Ali Mohammad, Ishii Takayoshi, Weiss Oda, Fuchs Jeorg, Schubert Veit, Houben Andreas (2024)., PLANT MOLECULAR BIOLOGY, 114(4).

2. Rational design engineering of a more thermostable Sulfurihydrogenibium yellowstonense carbonic anhydrase for potential application in carbon dioxide capture technologies

Ghaedizadeh Shima, Zeinali Majid, Dabirmanesh Bahareh, Rasekh Behnam, Khajeh Khosrow, Banaei Moghaddam Ali Mohammad (2024)., BIOCHIMICA ET BIOPHYSICA ACTA-PROTEINS AND PROTEOMICS, 1872(1), 140962.

1. Comparative Transcriptome Analysis of Hypocotyls During the Developmental Transition of C3 Cotyledons to C4 Leaves in Halimocnemis mollissima Bunge

Zolfaghar Mahdis, Rutten Twan, Ghaffari Mohammad Reza, Banaei Moghaddam Ali Mohammad (2023)., JOURNAL OF PLANT GROWTH REGULATION, -(-).

2. Rational engineering to produce more thermostable carbonic anhydrase from Sulfurihydrogenibium yellowstonense for industrial application

Ghaedizadeh Shima, Zeinali Majid, Dabirmanesh Bahareh, Rasekh Behnam, Khajeh Khosrow, Banaei Moghaddam Ali Mohammad (2023)., 24th Iran's International Congress of Microbiology, 18-20 September, Tehran, Iran.

3. A holistic view of muscle metabolic reprogramming through personalized metabolic modeling in newly diagnosed diabetic patients

Khoshnejat Maryam, Banaei Moghaddam Ali Mohammad, Moosavi Movahhedi Ali Akbar, Kavousi Kaveh (2023)., PLoS One, 18(6), e0287325.

4. Enhancement of amylase production by overexpressing of intracellular chaperons

نوری کوهانی فاطمه, کریمی آشتیانی راحله, Banaei Moghaddam Ali Mohammad (2023)., 5th International and 17th Iranian Genetics Congress, 6-8 March, Tehran, Iran.

5. Engineering the promoter and signal peptide of the amyE gene to increase the production of Bacillus subtilis alpha-amylase

قورچی بیگی امیر محمد, کریمی آشتیانی راحله, Banaei Moghaddam Ali Mohammad (2023)., 5th International and 17th Iranian Genetics Congress, 6-8 March, Tehran, Iran.

6. Enhance endogenous Subtilisin Secretion in Bacillus subtilis by CRISPR-mediated engineering of Promoter and Signal Peptide

Pourmohammad Mohammadjavad, Banaei Moghaddam Ali Mohammad (2023)., 5th International and 17th Iranian Genetics Congress, 6-8 March, Tehran, Iran.

7. Hypocotyls transcriptome modulation during the developmental transition of C3 cotyledons to C4 Leaves in Halimocnemis mollissima Bunge

Zolfaghar mahdis, Rutten Twan, Ghaffari Mohammad Reza, Banaei Moghaddam Ali Mohammad (2023)., 5th International and 17th Iranian Genetics Congress, 6-8 March, Tehran, Iran.

1. HDAC3 Knockdown Dysregulates Juvenile Hormone and Apoptosis-Related Genes in Helicoverpa armigera

Xu Zhenlu, Chang Huimin, Li Wenkang, Cai Chenggu, Wang Wenjing, Ge Pengliang, Jia Xue, Li Yingge, Ding Tianze, Ma Wei, Banaei Moghaddam Ali Mohammad, Mo Huijuan, Ren Maozhi (2022)., INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES, 23(23), 14820.

2. Toward elucidation of shoot-root communications involved in the developmental transition of C3 to C4 photosynthesis by comparative transcriptome analysis of hypocotyls in Halimocnemis mollissima

Zolfaghar mahdis, Ghaffari Mohammad Reza, Banaei Moghaddam Ali Mohammad (2022)., The 1st international and the 10th national Iranian Conference on Bioinformatics (ICB), 22-24 February, Kish Island, Iran.

3. EARN as a precision oncology tool leads us to propose the targeted genes panel for metastatic breast cancer

Mirsadeghi Leila, Kavousi Kaveh, Banaei Moghaddam Ali Mohammad (2022)., The 1st international and the 10th national Iranian Conference on Bioinformatics (ICB), 22-24 February, Kish Island, Iran.

4. Prediction of immunogenic peptides derived from FVIII by machine learning approach

BAHRAMIMOGHADAM MAHSA, Mazloumi Mohammadali, Kardar Gholam Ali, Banaei Moghaddam Ali Mohammad, Kavousi Kaveh (2022)., The 1st international and the 10th national Iranian Conference on Bioinformatics (ICB), 22-24 February, Kish Island, Iran.

1. NGS Serves to Promote Personalized Medicine: A Case- Report of a Patient with Invasive Breast Carcinoma

Mirsadeghi Leila, Haji Hosseini Reza, Banaei Moghaddam Ali Mohammad, Kavousi Kaveh (2021)., Experimental Animal Biology, 39(3), 67-74.

2. Elucidation of signaling pathways via comparative transcriptome analysis of hypocotyls during the developmental transition of C3 cotyledons to C4 leaves in Halimocnemis mollissima

Zolfaghar mahdis, Ghaffari Mohammad Reza, Banaei Moghaddam Ali Mohammad (2021)., First Plant Cell Atlas Symposium, 9-11 December, Washington, D.C., United States Of America (USA).

3. The Rye Genome

Houben Andreas, Ma Wei, Banaei Moghaddam Ali Mohammad (2021).

4. DEVELOPMENT OF NEW C4 CROPS

Marashi Sayed Amir, Dadras Armin, Banaei Moghaddam Ali Mohammad (2021)., 3rd International Cukurova Agriculture and Veterinary Congress, 9-10 October, Adama, Turkey.

5. Epigenome Engineering for boosting Crop Production

Banaei Moghaddam Ali Mohammad (2021)., 12th National And 4th International Biotechnology Congress of Islamic Republic of Iran, 22-24 August, Tehran, Iran.

6. NGS as a diagnostic tool in personalized medicine: A case-report of breast invasive ductal carcinoma

Mirsadeghi Leila, Kavousi Kaveh, Banaei Moghaddam Ali Mohammad, Haji Hosseini Reza (2021)., 12th National And 4th International Biotechnology Congress of Islamic Republic of Iran, 22-24 August, Tehran, Iran.

7. DNA methylation association with stage progression of head and neck squamous cell carcinoma

Ghafarpour Vahid, Khansari Mohammad, Banaei Moghaddam Ali Mohammad, Najafi Ali, Masoudi-Nejad Ali (2021)., COMPUTERS IN BIOLOGY AND MEDICINE, 134(1), 104473.

8. Transcriptomic analysis of genes involved in the signaling pathway that controls the developmental transition of photosynthesis from C3 to C4 in Halimocnemis mollissima

Zolfaghar Mahdis, Ghaffari Mohammad Reza, Banaei Moghaddam Ali Mohammad (2021)., 31st INTERNATIONAL CONFERENCE ON ARABIDOPSIS RESEARCH, 21-25 June, United States Of America (USA).

9. EARN: an ensemble machine learning algorithm to predict driver genes in metastatic breast cancer

Mirsadeghi Leila, Haji Hosseini Reza, Banaei Moghaddam Ali Mohammad, Kavousi Kaveh (2021)., BMC MEDICAL GENOMICS, 14(1), 1-19.

10. CAMAMED: a pipeline for composition-aware mapping-based analysis of metagenomic data

Norouzi-Beirami Mohammad Hossein, Marashi Sayed Amir, Banaei Moghaddam Ali Mohammad, Kavousi Kaveh (2021)., NAR Genomics and Bioinformatics, 3(1).

1. A Proposed Ensemble Classifier (EC) Machine Learning Algorithm for Evaluation of Plausible Drivers of Metastatic Breast Cancer

Mirsadeghi Leila, Kavousi Kaveh, Hajehossaini Reza, Banaei Moghaddam Ali Mohammad (2020)., Ninth Iranian Conference on Bioinformatics, 11-12 November, Tehran, Iran.

2. Sequence and expression analysis of Anethum graveolens prenyltransferase gene

Amiri Bita, Banaei Moghaddam Ali Mohammad (2020)., the fourth International and 16th National Genetics Congress, 30 September-2 October, Tehran, Iran.